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Firstly when your issuance email arrives you will have two
certificates in the email - your server certificate and a chained certificate.
Copy the chained certificate into a text editor such as notepad and save
as chain.cer.
Copy your web server certificate into a text editor such as notepad and save
as yourdomain.cer.
First install the chained certificate as follows:
On your webserver open by the Certificates snap-in
on the MMC:
1. Click the Start Button then select Run
and type mmc
2. Click File and select Add/Remove Snap in
3. Select Add, select Certificates from the Add Standalone
Snap-in box and click Add
4. Select Computer Account and click Finish
5. Close the Add Standalone Snap-in box, click OK in the
Add/Remove Snap-in
Return to the MMC:
1. Expand the Certificates entry in the MMC and right click the
Intermediate Certification Authorities, select All Tasks, select
Import.

2. Complete the import wizard, locating the chained certificate (chain.cer)
when prompted for the Certificate file to import.
3. Ensure that the chained certificate appears under Intermediate Certification
Authorities
Secondly, install your web server certificate:
1. Start IIS and right click Default Web Site and select Properties
from the menu.
2. When the Properties appear, click on the Directory Security
tab.
3. Click on Server Certificate and follow the on screen wizard:
Ensure that you select Process the pending request
and install the certificate. Click Next.
Locate the yourdomain.cer file when prompted to locate
your webserver certificate. Click Next.
Review the summary screen and ensure that you are
processing the correct certificate. Click Next.
Click Next on the confirmation screen.
4. Make sure that you have assigned Port 443 as the SSL port for https for your site. To do this, right click Properties for your website and make sure that 443 has been entered into the SSL port box:

You must restart your physical machine for the install to be completed.
Certificate Snap-in consoles (MMC) are not preconfigured. You will need to configure the Snap-in before you can perform any Export/Import functionality. To configure your Snap-in, follow the steps below. The system administrator will have to create the console.
Warning: If you lose the password, you must purchase another
certificate.
Save the file to a disk or other form of media. You should choose a form
of media that you would be able to recover if your system has to be rebuilt.
Save this file in a secure location.
*** Microsoft has an alert addressing a problem with exporting and importing
certificates.***
Service Pack 2 is intended to correct this problem. There is also a hotfix that
may be obtained from Microsoft that must be run prior to exporting and importing
your certificate. Please go to the following URL for more information or email
us at support@rapidssl.com.
http://support.microsoft.com/support/kb/articles/Q261/6/55.ASP